DOSEN PROFIL LENGKAP

TCF20
Identifiers
Aliases	TCF20, AR1, SPBP, TCF-20, transcription factor 20 (AR1), transcription factor 20, DDVIBA
External IDs	OMIM: 603107; MGI: 108399; GeneCards: TCF20
Gene location (Human)
Chr.	Chromosome 22 (human)
End	42,343,616 bp
Gene location (Mouse)
Chr.	Chromosome 15 (mouse)
End	82,872,073 bp
RNA expression pattern
	Top expressed in
	ganglionic eminence; ; bone marrow cell; ; islet of Langerhans; ; tonsil; ; mucosa of esophagus; ; blood; ; granulocyte; ; lymph node; ; olfactory zone of nasal mucosa; ; superior frontal gyrus;
	Top expressed in
	Rostral migratory stream; ; genital tubercle; ; tail of embryo; ; dentate gyrus of hippocampal formation granule cell; ; secondary oocyte; ; olfactory tubercle; ; ciliary body; ; dorsal striatum; ; conjunctival fornix; ; supraoptic nucleus;
	More reference expression data
	More reference expression data
Gene ontology
Molecular function	DNA binding; transcription coactivator activity; metal ion binding; RNA binding; DNA-binding transcription factor activity; protein binding;
Cellular component	nucleoplasm; nuclear body; nucleus;
Biological process	regulation of transcription, DNA-templated; transcription, DNA-templated; positive regulation of transcription by RNA polymerase II;
	Sources:Amigo / QuickGO
Orthologs
Databases	NCBI: entry; OMA: entry
	6942
	21411
ENSG00000283681; ENSG00000281897; ENSG00000262024; ENSG00000282892; ENSG00000283026;
	ENSG00000280467; ENSG00000100207; ENSG00000276461
	ENSMUSG00000041852
	Q9UGU0
	Q9EPQ8
	NM_005650; NM_181492; NM_001378418
	NM_001114140; NM_013836
	NP_005641; NP_852469; NP_001365347
	NP_001107612; NP_038864; NP_001389767
	Wikidata
View/Edit Human	View/Edit Mouse

Transcription factor 20 is a protein that in humans is encoded by the TCF20 gene.^[5]^[6]^[7]

The protein encoded by this gene binds a platelet-derived growth factor-responsive element in the matrix metalloproteinase 3. The protein localizes to the nucleus and displays DNA-binding and transactivation activities. It is thought to be a transcriptional coactivator, enhancing the activity of transcription factors such as JUN and SP1. Alternative splicing results in two transcript variants encoding different isoforms.^[7]

Interactions

TCF20 has been shown to interact with RNF4.^[8]

References

^ ^a ^b ^c ENSG00000281897, ENSG00000262024, ENSG00000282892, ENSG00000283026, ENSG00000280467, ENSG00000100207, ENSG00000276461 GRCh38: Ensembl release 89: ENSG00000283681, ENSG00000281897, ENSG00000262024, ENSG00000282892, ENSG00000283026, ENSG00000280467, ENSG00000100207, ENSG00000276461 – Ensembl, May 2017
^ ^a ^b ^c GRCm38: Ensembl release 89: ENSMUSG00000041852 – Ensembl, May 2017
^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
^ Rajadhyaksha A, Rivière M, Van Vooren P, Szpirer J, Szpirer C, Babin J, Bina M (October 1998). "Assignment of AR1, transcription factor 20 (TCF20), to human chromosome 22q13.3 with somatic cell hybrids and in situ hybridization". Cytogenetics and Cell Genetics. 81 (3–4): 176–7. doi:10.1159/000015021. PMID 9730594. S2CID 46832690.
^ Rekdal C, Sjøttem E, Johansen T (December 2000). "The nuclear factor SPBP contains different functional domains and stimulates the activity of various transcriptional activators". The Journal of Biological Chemistry. 275 (51): 40288–300. doi:10.1074/jbc.M006978200. PMID 10995766.
^ ^a ^b "Entrez Gene: TCF20 transcription factor 20 (AR1)".
^ Lyngsø C, Bouteiller G, Damgaard CK, Ryom D, Sanchez-Muñoz S, Nørby PL, Bonven BJ, Jørgensen P (August 2000). "Interaction between the transcription factor SPBP and the positive cofactor RNF4. An interplay between protein binding zinc fingers". The Journal of Biological Chemistry. 275 (34): 26144–9. doi:10.1074/jbc.M003405200. PMID 10849425.

Sanz L, Moscat J, Diaz-Meco MT (June 1995). "Molecular characterization of a novel transcription factor that controls stromelysin expression". Molecular and Cellular Biology. 15 (6): 3164–70. doi:10.1128/mcb.15.6.3164. PMC 230548. PMID 7760812.
Kirstein M, Sanz L, Quiñones S, Moscat J, Diaz-Meco MT, Saus J (July 1996). "Cross-talk between different enhancer elements during mitogenic induction of the human stromelysin-1 gene". The Journal of Biological Chemistry. 271 (30): 18231–6. doi:10.1074/jbc.271.30.18231. PMID 8663478.
Ohara O, Nagase T, Ishikawa K, Nakajima D, Ohira M, Seki N, Nomura N (February 1997). "Construction and characterization of human brain cDNA libraries suitable for analysis of cDNA clones encoding relatively large proteins". DNA Research. 4 (1): 53–9. CiteSeerX 10.1.1.325.2199. doi:10.1093/dnares/4.1.53. PMID 9179496. {{cite journal}}: Cite uses deprecated parameter |citeseerx= (help)
Dunham I, Shimizu N, Roe BA, Chissoe S, Hunt AR, Collins JE, Bruskiewich R, Beare DM, Clamp M, Smink LJ, Ainscough R, Almeida JP, Babbage A, Bagguley C, Bailey J, Barlow K, Bates KN, Beasley O, Bird CP, Blakey S, Bridgeman AM, Buck D, Burgess J, Burrill WD, O'Brien KP (December 1999). "The DNA sequence of human chromosome 22". Nature. 402 (6761): 489–95. Bibcode:1999Natur.402..489D. doi:10.1038/990031. PMID 10591208.
Lyngsø C, Bouteiller G, Damgaard CK, Ryom D, Sanchez-Muñoz S, Nørby PL, Bonven BJ, Jørgensen P (August 2000). "Interaction between the transcription factor SPBP and the positive cofactor RNF4. An interplay between protein binding zinc fingers". The Journal of Biological Chemistry. 275 (34): 26144–9. doi:10.1074/jbc.M003405200. PMID 10849425.
Beausoleil SA, Jedrychowski M, Schwartz D, Elias JE, Villén J, Li J, Cohn MA, Cantley LC, Gygi SP (August 2004). "Large-scale characterization of HeLa cell nuclear phosphoproteins". Proceedings of the National Academy of Sciences of the United States of America. 101 (33): 12130–5. Bibcode:2004PNAS..10112130B. doi:10.1073/pnas.0404720101. PMC 514446. PMID 15302935.
Rush J, Moritz A, Lee KA, Guo A, Goss VL, Spek EJ, Zhang H, Zha XM, Polakiewicz RD, Comb MJ (January 2005). "Immunoaffinity profiling of tyrosine phosphorylation in cancer cells". Nature Biotechnology. 23 (1): 94–101. doi:10.1038/nbt1046. PMID 15592455. S2CID 7200157.
Gburcik V, Bot N, Maggiolini M, Picard D (May 2005). "SPBP is a phosphoserine-specific repressor of estrogen receptor alpha". Molecular and Cellular Biology. 25 (9): 3421–30. doi:10.1128/MCB.25.9.3421-3430.2005. PMC 1084313. PMID 15831449.
Olsen JV, Blagoev B, Gnad F, Macek B, Kumar C, Mortensen P, Mann M (November 2006). "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks". Cell. 127 (3): 635–48. doi:10.1016/j.cell.2006.09.026. PMID 17081983.
Sjøttem E, Rekdal C, Svineng G, Johnsen SS, Klenow H, Uglehus RD, Johansen T (2007). "The ePHD protein SPBP interacts with TopBP1 and together they co-operate to stimulate Ets1-mediated transcription". Nucleic Acids Research. 35 (19): 6648–62. doi:10.1093/nar/gkm739. PMC 2095823. PMID 17913746.

This article on a gene on human chromosome 22 is a stub. You can help Wikipedia by adding missing information.

[refGRCh38Ensembl-1] ENSG00000281897, ENSG00000262024, ENSG00000282892, ENSG00000283026, ENSG00000280467, ENSG00000100207, ENSG00000276461 GRCh38: Ensembl release 89: ENSG00000283681, ENSG00000281897, ENSG00000262024, ENSG00000282892, ENSG00000283026, ENSG00000280467, ENSG00000100207, ENSG00000276461 – Ensembl, May 2017

[refGRCm38Ensembl-2] GRCm38: Ensembl release 89: ENSMUSG00000041852 – Ensembl, May 2017

[3] "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.

[4] "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.

[pmid9730594-5] Rajadhyaksha A, Rivière M, Van Vooren P, Szpirer J, Szpirer C, Babin J, Bina M (October 1998). "Assignment of AR1, transcription factor 20 (TCF20), to human chromosome 22q13.3 with somatic cell hybrids and in situ hybridization". Cytogenetics and Cell Genetics. 81 (3–4): 176–7. doi:10.1159/000015021. PMID 9730594. S2CID 46832690.

[pmid10995766-6] Rekdal C, Sjøttem E, Johansen T (December 2000). "The nuclear factor SPBP contains different functional domains and stimulates the activity of various transcriptional activators". The Journal of Biological Chemistry. 275 (51): 40288–300. doi:10.1074/jbc.M006978200. PMID 10995766.

[entrez-7] "Entrez Gene: TCF20 transcription factor 20 (AR1)".

[pmid10849425-8] Lyngsø C, Bouteiller G, Damgaard CK, Ryom D, Sanchez-Muñoz S, Nørby PL, Bonven BJ, Jørgensen P (August 2000). "Interaction between the transcription factor SPBP and the positive cofactor RNF4. An interplay between protein binding zinc fingers". The Journal of Biological Chemistry. 275 (34): 26144–9. doi:10.1074/jbc.M003405200. PMID 10849425.

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DOSEN PROFIL LENGKAP

TCF20

Interactions

References

Further reading

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